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Imagine this. You're at the Hyatt Regency Chicago

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That's the beckershospitalreview.com

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events page. See you in Chicago.

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This is Laura Dierda with the Becker's Healthcare

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Podcast. I'm thrilled today to be joined by

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doctor Paul Kruska, who's a clinical geneticist at

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Children's National Hospital in Washington, DC. Doctor Kruska,

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it's a pleasure to have you on the

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podcast today.

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Yes. Thank you for having me. I really

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appreciate it.

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Now I'm looking forward to our discussion. I

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know there's so much happening in the health

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care space and in particular

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in, genomic testing, just really a fast moving

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field. But before we dive into the broader

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questions, can you tell us a little bit

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more about yourself and your background?

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Yes.

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I'm a physician,

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and I'm board certified in clinical genetics. This

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is a specialty that I find a lot

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of people don't know much about. We're a

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we're a small specialty, and

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and what we do is we diagnose

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and treat a large portion of rare diseases.

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I spend most of my time as chief

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medical officer at a company called GeneX. We

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do commercial testing,

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and I'm also a

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faculty member at Children's National Medical Center where

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I teach genetic residents, the next generation of

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clinical

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geneticists.

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And prior to GeneDx, I spent over a

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decade as a physician scientist researching rare diseases

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at the National Human Genome Research

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Institute, and that's one of the institutes

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National Institutes of Health in Bethesda, Maryland.

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So, really, my my professional career centered around

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helping families

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and patients affected by rare disease.

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That sounds like a fascinating role to play.

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And given your experience, what are some of

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the key developments in genomic testing over the

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last 5 years or so?

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Yes. The the the last the the last

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5 years have been fantastic

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for,

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for genetic testing and and really,

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for patients and and their families.

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And

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the the biggest change in the last 5

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years has been a dramatic shift to broad

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based testing

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with whole exome sequencing and whole genome

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sequencing.

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For your listeners not familiar with these tests,

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whole genome sequencing

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sequences our entire genetic code, if you can

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believe it. It's all 33,000,000,000

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base pairs of DNA,

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our our our genetic code. And whole exome

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sequencing

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focuses on the exome, which consists of the

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protein coding regions of the genome, and this

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is about 2% of our genome.

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Most disease causing variation

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in clinical genetics and genetic diseases occurs in

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the exome.

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But as we learn more about variation outside

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of these protein coding regions, whole genome sequencing

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is becoming increasingly more important. So really

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exciting,

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shift. And and there's there's

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a number of reasons for this shift to

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the broad based,

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testing.

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And the most important piece is that clinical

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studies

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clinical evidence

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shows a higher diagnostic

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yield for whole genome sequencing and whole exome

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sequencing over other types of testing, such as

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multi gene panels and chromosomal microarray.

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Another big reason for the shift is professional

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organizations such as the one I belong to,

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the American College of Medical Genetics and Genomics,

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are recommending that clinicians use whole exome sequencing

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and whole genome sequencing as a first tier

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test for

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conditions such as developmental delay,

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intellectual disability, congenital anomalies, and epilepsy.

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And, 3rd, health insurance companies are starting to

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pay for this.

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Both public and private

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payers are starting to reimburse for coxumecipacine

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and whole genome sequencing. Matter of fact, 90%

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of commercial payers

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are paying for whole exome and whole genome.

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So this is huge.

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And then last,

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which is is is also

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related to to the payers, that the technology

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is improving and the cost of these technologies

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are dropping.

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So exome and sequencing,

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whole exome sequencing, and whole genome sequencing prices

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are are dropping. So this is this testing

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is becoming more accessible.

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That's great to hear. You know, I'm really,

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fascinating

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that these tests are becoming more accessible,

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and people's ability to really know more about

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themselves and and prepare as well. I can

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imagine it is really beneficial.

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What do pediatricians

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need to understand about the advantages of some

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of this advanced

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genomic testing versus other categories of genetic testing?

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Yes.

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They need to know a lot. So that's

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the the the short answer. The the long

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answer is,

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I want I wanna group these

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these tests into 3 buckets. So first, I've

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already talked about broad based testing, whole exome

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sequencing, and whole genome sequencing. So let's put

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that in one bucket.

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And and and both of these tests,

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as I noted,

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covers our entire genome. So we have 20,000

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genes, so it covers all of that. Now

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bucket number 2 are multi gene panels, and

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these test 100 of genes or less.

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And this was very popular,

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in in the past, you know, in the

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past 10 years because it was less expensive

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than doing the whole genome or whole exome.

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So second bucket, like I said, are multi

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gene panel. And then the 3rd group is

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something called chromosomal microarray,

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and this was being developed back when I

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was a a medical

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school student and and resident in training, many

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years ago. And this looks for large duplications

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and deletions of our genes in our in

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our genome, often involving millions of base pairs

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of of DNA. So that's the 3rd bucket.

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And so all 3 of these buckets are

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being used today.

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And what the pediatrician needs to know,

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and this is the most important

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fact that they need to know, is that

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the diagnostic yield is significantly higher for exome

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and genome than the other types of testing,

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which makes sense as as exomes and genomes

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are are much more comprehensive.

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And rare disease discovery

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continues to progress at a very high rate.

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There's hundreds of new gene disease associations

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every

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year. So you can imagine that these panels

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just can't get big enough to include all

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these different genes. So broad based testing is

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able to capture these new discoveries where a

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panel is limited to

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the genes that were originally placed on the

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panel. And then there's microarray, the 3rd bucket,

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and this looks for

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large

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duplications or deletions of our genome.

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And we're talking about millions of base pairs

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and hundreds of genes often needs deletions.

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But, really, we want the resolution down to

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a single base pair or single alphabet of

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our genome, and that's where

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whole exome sequencing and whole genome sequencing

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really puts the bill. It gets right down

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to single base pair changes along with what

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microarray does anyway. So this broad based testing

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is much more efficient, and it's better for

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patients and their families because

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they get a diagnosis

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quicker. Many many clinicians today are doing what

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we call serial testing. They'll start out with

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a chromosomal microarray, then it move to a

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multi gene panel. Then finally, they'll get around

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to broad based testing with whole exome sequencing

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or whole genome sequencing.

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And this delays the diagnosis as I mentioned.

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And also, it incurs unnecessary

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medical costs. So just,

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the medical

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associations

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and the payers are definitely pointing to what

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the medical evidence says. Let's go straight to

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broad based testing.

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That's great to hear. You know, and really

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powerful information for physicians and pediatricians in particular

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is they're looking at how they can advise

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their patients, see what really the next steps

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are moving forward.

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Now I'm wondering too, what are some of

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the barriers to patient and provider access to

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the advanced, genomic testing, and what steps need

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to be taken in order to increase that

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access?

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Access to a medical provider who can order

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and diagnose a rare condition is the biggest

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barrier in my opinion.

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There are very few medical geneticists in this

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country. And as I said in the introduction,

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I'm a medical geneticist.

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And

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we, the medical geneticists, are the main state

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for ordering genetic testing in North America.

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A recent report by the National Academies of

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Sciences, Engineering, and Medicine on pediatric subspecialties

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reported that clinical geneticists

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and of all other specialists

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to be seen.

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In my experience,

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it is not unusual

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to wait 1 year for a referral to

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a clinical geneticist.

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This simply is unacceptable

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for patients to have to wait that long

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and families. This this prolongs their suffering, but

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also strains an already stretched health system.

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There's also low uptake and understanding from non

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geneticists

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less familiar with advanced genomic testing such as

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whole exome sequencing and whole genome sequencing.

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As guidelines

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and coverage continue to increase pointing to the

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critical role of these tests in pediatric care,

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I really want to see more non geneticists

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like pediatricians

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embracing these tests as a standard of care.

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And until we get to that point, there's

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gonna be long waiting

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lines

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or for patients and families to get this

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type of testing and a precision diagnosis.

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Another barrier is patient and family awareness about

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genomic testing. I've spoken to many families with

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conditions such as epilepsy or autism

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that wish they had known about genetic testing

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years before they received the diagnosis.

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It's well known that less than 1 in

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6 parents or 15%

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of parents of undiagnosed

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children

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have

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heard of or are familiar with advanced testing

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such as whole exome sequencing or whole genome

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sequencing.

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So these this lack of awareness

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testing is is really the number one barrier.

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And I I don't I don't wanna skip

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over commercial insurers and payers. Well, 90% of

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commercial

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insurers

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pay for this type of testing. As I

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mentioned before,

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in 28 states

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cover whole genome sequencing or whole exome sequencing

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through state Medicaid programs,

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our payer system is still not perfect. And

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there's certainly a lot of opportunity with payers

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to improve re the reimbursement process and make

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it easier for ordering providers to to order

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these tests.

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That's such a great point. You know that,

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kind of closing the gap with the number

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of providers

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and specialists who are are doing these tests

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plus making sure there's access from insurance and,

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from that perspective is so crucial.

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Looking ahead, what's on the horizon for genomic

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medicine? What do you really see over the

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next few years?

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Yeah. That's that's something I love to talk

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about. I I teach medical students,

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here in the Washington DC area, and what

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I tell them is

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my

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specialty or or my career with the diagnosis,

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and their career is gonna be in treatment.

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We are really in the golden age

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of genomic medicine right now with all these

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new treatments and improved testing such as whole

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exome and whole sequencing. So we're really in

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an an exciting

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time going forward.

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What I see on the horizon

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is eliminating the diagnostic odyssey. So there's there's

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a term we use a lot, and I

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might have mentioned it earlier

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in this podcast. But the diagnostic odyssey is

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the time when symptoms begin

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until a diagnosis is made.

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And in rare disease, it averages about 6

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years.

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And I don't think any of us in

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the cyst in the ecosystem and the rare

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disease

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ecosystem

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should sleep until this time is much shorter.

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6 years is too long

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to to have a diagnosis. So as we

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move forward,

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for both children and adults,

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the horizon

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is in the future, is gonna show a

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decrease in the diagnostic odyssey. And there's a

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lot of reasons for this. One is is

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we've talked about in this this podcast that

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improved,

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access to whole exome and whole c whole

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genome sequencing.

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Another part that that's really gonna decrease the

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diagnostic odyssey

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is moving testing earlier in people's lives.

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I wanna talk just briefly about this project

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that's called, the Guardian Project. And there's other

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projects like this

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around the world right now. And this is

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where we

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expand newborn screening to diagnose

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more rare diseases

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earlier and presumably healthy

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infants before

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symptoms set in and and and cause harm

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to to these infants. And there's a there's

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really an exciting project

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that is taking place in New York City

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through Columbia University,

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the New York State Health Department,

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and,

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GNDX, the the company where I spend a

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lot of time. And we're newborn

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screening newborn screening traditional newborn screening that's supplemented

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with whole genome sequencing technology.

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And this program has sequenced over 10,000

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babies in New York City.

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And a test for an additional 450

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rare disease conditions

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that are actionable.

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And so you can imagine instead of diagnosing

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a child who has suffered 10 years without

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knowing to diagnosis, you're diagnosing

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these conditions in infancy.

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And like I said, over 10,000 infants have

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been completed. We're seeing a diagnostic yield about

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3%. So 3% of individuals are getting the

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test, and the consent rate is surprisingly high.

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This is a research project,

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through Columbia University in in New York City,

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and the the consent rate is over 70%.

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So this is really fantastic. This is an

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example

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of diagnosing

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rare disease

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earlier in in in cutting out that diagnostic

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odyssey. And then there's a lot of other

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really exciting things that that are happening in

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in North America.

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A lot of neonatal intensive care units or

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NICUs are starting to do what we call

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rapid whole genome sequencing in the NICUs where

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we have critically ill infants,

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and they're doing testing.

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And it gives these these infants

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a diagnosis and allows for a precision therapy.

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So

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moving the needle earlier and earlier,

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00:15:53,750 --> 00:15:56,410
is gonna be extremely helpful. And I and

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as we move forward in the next 5

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years, you're gonna see a lot of these

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00:16:01,350 --> 00:16:02,490
earlier testing,

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00:16:03,429 --> 00:16:04,570
programs implemented.

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So this is this these are some of

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00:16:08,565 --> 00:16:10,084
the the things that I see on the

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horizon.

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And and then the last thing is is

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what we talked about before, I think.

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Pediatricians

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00:16:17,044 --> 00:16:19,605
and non geneticists are gonna take the the

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00:16:19,605 --> 00:16:22,429
baton from geneticists and and really

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00:16:23,129 --> 00:16:24,830
decrease those long waiting

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00:16:25,210 --> 00:16:25,710
lines

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00:16:26,169 --> 00:16:27,149
for for,

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00:16:27,610 --> 00:16:29,070
care and testing.

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00:16:30,570 --> 00:16:32,889
That's fascinating. Doctor Kruska, thank you so much

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00:16:32,889 --> 00:16:34,664
for joining us on the podcast today. This

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00:16:34,664 --> 00:16:37,304
is a really informative and interesting discussion, and

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00:16:37,304 --> 00:16:38,825
I look forward to connecting with you again

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00:16:38,825 --> 00:16:39,325
soon.

426
00:16:40,424 --> 00:16:42,664
Yes. Thank you for having me, and and

427
00:16:42,664 --> 00:16:45,625
I I really enjoyed speaking and and and

428
00:16:45,625 --> 00:16:47,705
really wanna get the word out about the

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00:16:47,705 --> 00:16:50,187
diagnostic odyssey is alive and well at 6

430
00:16:50,187 --> 00:16:52,747
years, and and we really we really need

431
00:16:52,747 --> 00:16:54,367
to to make that smaller.